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English(EN) Expanding functional protein sequence space using high entropy generative models

AI模型CodeFP和Proteo-R1推动从头蛋白质设计

研究人员开发了新的从头蛋白质设计AI模型,旨在创建功能性蛋白质,而不依赖进化模板。一种方法CodeFP同时解码序列和结构,以提高功能性和可折叠性,与现有方法相比有显著的改进。另一个模型Proteo-R1通过使用多模态大型语言模型识别关键残基,然后指导基于扩散的生成器,将分子理解与几何生成分离开来。第三项研究探索了高熵生成模型,发现像meDCA这样的最大熵模型可以代表一个大得多的功能序列空间,同时最小化过拟合并更好地捕捉进化适应度景观。 AI

影响 AI驱动的蛋白质设计进展可以加速药物发现和新型生物材料的开发。

排序理由 多篇arXiv论文提出了新颖的AI模型和蛋白质设计方法。

在 arXiv cs.LG 阅读 →

AI 生成摘要 · Google Gemini · 来自 5 个来源。 我们如何撰写摘要 →

AI模型CodeFP和Proteo-R1推动从头蛋白质设计

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多篇arXiv论文提出了新颖的AI模型和蛋白质设计方法。
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报道来源 [5]

  1. arXiv cs.AI TIER_1 Deutsch(DE) · Xinrui Chen, Yizhen Luo, Siqi Fan, Zaiqing Nie ·

    协同生成从头功能蛋白设计

    arXiv:2605.00948v1 Announce Type: cross Abstract: De novo functional protein design aims to generate protein sequences that realize specified biochemical functions without relying on evolutionary templates, enabling broad applications in biotechnology and medicine. Existing appro…

  2. arXiv cs.LG TIER_1 English(EN) · Fang Wu, Weihao Xuan, Heli Qi, Hanqun Cao, Heng-Jui Chang, Zeqi Zhou, Haokai Zhao, Ma Jian, Carl Ma, Yu-Chi Cheng, Kuan Pang, Xiangru Tang, Zehong Wang, Guanlue Li, Hanchen Wang, Kejun Ying, Pan Lu, Chiho Im, Seungju Han, Peng Xia, Tinson Xu, Yinxi Li, De ·

    Proteo-R1:从头设计蛋白质的推理基础模型

    arXiv:2605.02937v1 Announce Type: new Abstract: Deep learning in \emph{de novo} protein design has achieved atomic-level fidelity. However, existing models remain largely non-deliberative: they directly synthesize molecular geometries without explicitly reasoning about which resi…

  3. arXiv cs.LG TIER_1 English(EN) · Roberto Netti, Emily Hinds, Francesco Calvanese, Rama Ranganathan, Martin Weigt, Francesco Zamponi ·

    使用高熵生成模型扩展功能蛋白质序列空间

    arXiv:2605.03578v1 Announce Type: cross Abstract: Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, …

  4. arXiv cs.LG TIER_1 English(EN) · Francesco Zamponi ·

    使用高熵生成模型扩展功能蛋白质序列空间

    Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, and experimental performance remains poorly unders…

  5. Hugging Face Daily Papers TIER_1 English(EN) ·

    使用高熵生成模型扩展功能蛋白质序列空间

    Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, and experimental performance remains poorly unders…