English(EN)Expanding functional protein sequence space using high entropy generative models
AI模型CodeFP和Proteo-R1推动从头蛋白质设计
作者PulseAugur 编辑部·[5 个来源]·
研究人员开发了新的从头蛋白质设计AI模型,旨在创建功能性蛋白质,而不依赖进化模板。一种方法CodeFP同时解码序列和结构,以提高功能性和可折叠性,与现有方法相比有显著的改进。另一个模型Proteo-R1通过使用多模态大型语言模型识别关键残基,然后指导基于扩散的生成器,将分子理解与几何生成分离开来。第三项研究探索了高熵生成模型,发现像meDCA这样的最大熵模型可以代表一个大得多的功能序列空间,同时最小化过拟合并更好地捕捉进化适应度景观。
AI
arXiv:2605.00948v1 Announce Type: cross Abstract: De novo functional protein design aims to generate protein sequences that realize specified biochemical functions without relying on evolutionary templates, enabling broad applications in biotechnology and medicine. Existing appro…
arXiv:2605.02937v1 Announce Type: new Abstract: Deep learning in \emph{de novo} protein design has achieved atomic-level fidelity. However, existing models remain largely non-deliberative: they directly synthesize molecular geometries without explicitly reasoning about which resi…
arXiv cs.LG
TIER_1English(EN)·Roberto Netti, Emily Hinds, Francesco Calvanese, Rama Ranganathan, Martin Weigt, Francesco Zamponi·
arXiv:2605.03578v1 Announce Type: cross Abstract: Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, …
Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, and experimental performance remains poorly unders…
Boltzmann Machines trained on evolutionary sequence data have emerged as a powerful paradigm for the data-driven design of artificial proteins. However, the relationship between model architecture, specifically parameter density, and experimental performance remains poorly unders…