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New GC-MoE model predicts cell gene expression from histology images

Researchers have developed GC-MoE, a novel method for estimating gene expression in individual cells from histopathological images. This approach utilizes a Mixture-of-Experts model guided by genomics to predict cell-type probabilities and gene expression, aiming to reduce the need for expensive single-cell measurements. The system incorporates cell-type-specific predictors and attention modules to capture gene programs and neighboring cell context, showing improved results over existing methods. AI

IMPACT This method could significantly reduce the cost and complexity of spatial transcriptomics research by enabling gene expression prediction from standard histology images.

RANK_REASON The cluster contains a research paper detailing a new methodology for a specific scientific task.

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New GC-MoE model predicts cell gene expression from histology images

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COVERAGE [2]

  1. arXiv cs.AI TIER_1 English(EN) · Kaito Shiku, Ahtisham Fazeel Abbasi, Ryoma Bise, Yuichiro Iwashita, Kazuya Nishimura, Andreas Dengel, Muhammad Nabeel Asim ·

    GC-MoE: Genomics-Guided Cell-Type-Specific Mixture of Experts for Histology-Based Single-Cell Spatial Transcriptomics

    arXiv:2606.02424v1 Announce Type: cross Abstract: Histology-based single-cell spatial transcriptomics (ST) estimation aims to predict gene expression for individual cells from histopathological images and cell locations, reducing the need for costly single-cell ST measurements. U…

  2. arXiv cs.AI TIER_1 English(EN) · Muhammad Nabeel Asim ·

    GC-MoE: Genomics-Guided Cell-Type-Specific Mixture of Experts for Histology-Based Single-Cell Spatial Transcriptomics

    Histology-based single-cell spatial transcriptomics (ST) estimation aims to predict gene expression for individual cells from histopathological images and cell locations, reducing the need for costly single-cell ST measurements. Unlike existing histology-to-ST methods that mainly…