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BioHub releases ESMFold 2, challenging AlphaFold with scaled transformer models

BioHub has released ESMFold 2, an open scientific engine for protein biology, leveraging transformer models trained on vast protein sequence data. This new model demonstrates state-of-the-art performance in predicting protein interactions, particularly for antibodies, and shows promise in cancer and immunology research. ESMFold 2's approach, which relies on scaling laws and unsupervised learning rather than traditional multi-sequence alignments used by models like AlphaFold, suggests a potential shift in protein structure prediction methodologies. AI

IMPACT Challenges existing protein folding models like AlphaFold, potentially accelerating drug discovery and therapeutic development through scaled transformer architectures.

RANK_REASON Release of a new scientific model and associated paper demonstrating state-of-the-art performance.

Read on Latent Space (swyx) →

AI-generated summary · Google Gemini · from 2 sources. How we write summaries →

BioHub releases ESMFold 2, challenging AlphaFold with scaled transformer models

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Release of a new scientific model and associated paper demonstrating state-of-the-art performance.
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model release, paper, other
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COVERAGE [2]

  1. Latent Space (swyx) TIER_1 English(EN) · RJ Honicky ·

    🔬ESMFold2: The Bitter Lesson is Coming for Proteins - Alex Rives, BioHub

    Datasets vs. inductive bias, world models, and programmable biology

  2. Latent Space (podcast video) TIER_1 English(EN) · Latent Space ·

    🔬 The Bitter Lesson is Coming for Proteins - Alex Rives, BioHub

    Editor’s note: In our first BioHub pod with Priscilla and Mark they discussed their acquisition of EvoScale, led by Alex Rives, who is now Head of Science at BioHub. With ESM-1 they trained language models on millions of protein sequences drawn from across life, with a simple “ne…