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LLMs require specialist tools for MS/MS structural elucidation, study finds

A new research paper explores the capabilities of large language models (LLMs) in structural elucidation using tandem mass spectrometry (MS/MS). The study found that while LLMs can achieve moderate accuracy on in-distribution data (structures well-documented in literature), their performance drastically drops on out-of-distribution data (essentially undocumented structures). Access to specialized tools, such as de novo structure generators, significantly improved the LLMs' out-of-distribution accuracy, suggesting that LLMs alone are insufficient for de novo MS/MS structural elucidation and rely heavily on external domain-specific tools. AI

IMPACT Highlights the current limitations of LLMs in specialized scientific domains and the necessity of integrating them with domain-specific tools for advanced problem-solving.

RANK_REASON Research paper detailing limitations of LLMs and their reliance on external tools for a specific scientific task. [lever_c_demoted from research: ic=1 ai=1.0]

Read on arXiv cs.CL →

AI-generated summary · Google Gemini · from 1 sources. How we write summaries →

LLMs require specialist tools for MS/MS structural elucidation, study finds

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Research paper detailing limitations of LLMs and their reliance on external tools for a specific scientific task. [lever_c_demoted from research: ic=1 ai=1.0]
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COVERAGE [1]

  1. arXiv cs.CL TIER_1 English(EN) · Gabriel Asher, Cailum M. K. Stienstra, Tomo Oga, Devesh Shah Antonio H. de O. Fonseca, Niall O'Connor, Michael Widrich ·

    LLMs Depend on Specialist Tools for Out-of-Distribution Generalization in MS/MS Structural Elucidation

    arXiv:2611.03308v1 Announce Type: cross Abstract: A frontier language model was recently reported to solve 1D NMR structural elucidation without tools. We ask whether this capability transfers to tandem mass spectrometry (MS/MS) in the de novo setting, where the model must propos…