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New preference-based learning framework enhances antibody design

Researchers have developed a novel preference-based learning framework to improve antibody expression ranking, a crucial step in antibody design. This method leverages scarce quantitative expression data alongside a large dataset of weak positive supervision from immunization data. By adapting Direct Preference Optimization (DPO) for protein language models and incorporating IMGT-based alignment, the framework efficiently trains on variable-length sequences. Evaluations on a substantial internal dataset demonstrated that this approach consistently surpasses existing baselines, offering a scalable solution for optimizing antibody expressibility in data-limited scenarios. AI

IMPACT This research could accelerate the development of new therapeutics by improving the efficiency of antibody design.

RANK_REASON The cluster contains an academic paper detailing a new method for a specific scientific task. [lever_c_demoted from research: ic=1 ai=1.0]

Read on arXiv cs.LG →

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New preference-based learning framework enhances antibody design

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The cluster contains an academic paper detailing a new method for a specific scientific task. [lever_c_demoted from research: ic=1 ai=1.0]
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COVERAGE [1]

  1. arXiv cs.LG TIER_1 English(EN) · Josh Qixuan Sun, Morteza Babaie, Wenyang Hou, Mark Crowley, David Young ·

    Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision

    arXiv:2607.16263v1 Announce Type: new Abstract: Antibody expression ranking is a critical task in antibody design, yet its modelling is severely hindered by the scarcity of labeled experimental data. To address this, we propose a unified preference-based learning framework that i…